Guyan Liang, J. Philip Bays and J. Phillip Bowen. "Ab Initio Calculations and Molecular Mechanics (MM3) Force Field Development for Sulfonamide and Its Alkyl Derivatives",   Theochem40, 1/2,  pg 165 (Sept. 1, 1997)

Alan R. Potts, Dale R. Nesselrodt, Thomas Baer, Jeffrey W. Driscoll, and J. Philip Bays, "The 3s Rydberg Spectra and Conformations of Methyl Substituted Cyclopentanones",  The Journal of Physical Chemistry,  99, 12090-12098. (1995)

J. Philip Bays, “A Consumer’s Guide to Desktop Molecular Modeling”,  J. Chem. Ed., 69, 209 (1992)]

Matthew N. Mattson, J. Philip Bays, Victoria Stolarski*, Julie Zakutansky*, and Paul Helquist, "Improved One Flask Preparation of Cyclopropanation Reagents: [(C5H5)(CO)2FeCH2S(CH3)2]+  BF4- and  [(C5Me5)(CO)2FeCH2S(CH2)2]+ BF4-,
J. Org. Chem., 54, 2647 (1989)
Linda J. Johnston, J. C. Scaiano, J. W. Sheppard, and J. P. Bays, "Photochemistry of 1-benzoyl-2,2- dialkylcyclopropanes. Importance of Conformational Effects on Biradical Lifetimes.",  Chem. Phys. Lett, 24, 493, (1986).

Xavier Creary, B. Benage, E.M. Mehrsheikh-Mohammadi and J.P. Bays, "The Effect of Diethylphosphonate on Free Radical Stabilities", Tetrahedron Letters, 26, 2383 (1985)

J. P.  Bays,  S. T.  Blumer*,  S. Baral-Tosh,  D. Behar, and P. Neta, "Intramolecular Electron Transfer and Dehalogenation of Nitroaromatic Anion Radicals",  Journal of the American Chemical Society, 105, 320  (1983)
J. C. Scaiano,  J. P. Bays,  and M. V. Encinas,  "Photoenolization in Polymers", ACS Symposium Series,  151, 19 (1981).

J. P. Bays,  M. V. Encinas,  and J. C. Scaiano,  "Photochemistry of Polymers and Copolymers of Phenyl Vinyl Ketone and o-Tolyl Vinyl Ketone",  Macromolecules, 13,  815 (1980).

J. P.  Bays,  M. V. Encinas,  J. C. Scaiano,  "Laser Flash Photolysis Study of o-tolyl vinyl ketone-methyl vinyl ketone copolymers.  Electron Donor Properties of the Intermediate Macrobiradicals", Polymer, 21,  283 (1980).
J. P.  Bays, M. V. Encinas, R. D. Small, Jr.  and J. C. Scaiano, "Photochemistry of 1,5-diaryl-1,5-diketones",
J.  Am.  Chem.  Soc., 102, 727 (1980).
J. P. Bays, M. V. Encinas, and J. C. Scaiano, "Photoenolization in Polymers.  A simple Way to Reduce Photodegredation", Macromolecules, 12, 348 (1979).
J. P.  Bays, "Phenylacetone Dianion:  Alkylation with Iodomethane",   J. Organic Chemistry, 43, 38 (1978).

* Saint Mary's College student
Workshops on Molecular Modeling "Molecular Modeling in the Classroom: What can I do and What do I need?"
     International Conference on Chemical Education, San Juan, Puerto Rico,  August 1994

Two invited papers at the ACS Midwest Regional Meeting in LaCrosse Wisconsin; June, 1995
     "Molecular Modeling Software: What's Available and What Will it Do?"
     "Molecular Modeling in Organic Chemistry: With What?  To Do What? Instead of What?"

"Molecular Modeling in the Classroom,"
    Carleton College, May 1997.

"Molecular Modeling in Organic Chemistry: With What?  To Do What?,
      The University of Richmond, Mellon/FIPSE Symposium, Aug. 2, 1997


Computer-Assisted Instructional  Software

J. Philip  Bays, "Organic Stereochemistry - A Software Package for the Apple II" -  COMPress - a Division of Wadsworth, Inc.  (1984);  Currently Marketed by QUEUE

J. Philip Bays,  "MacStereo - Organic Stereochemistry for the Mac", Falcon Software, 1989

J. Philip Bays, "MacQual - A Simulated Qual Organic Exercise", Falcon Software, 1989